Serveur d'exploration SRAS

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Comparison of genomic and amino acid sequences of eight Japanese encephalitis virus isolates from bats

Identifieur interne : 001B19 ( Main/Exploration ); précédent : 001B18; suivant : 001B20

Comparison of genomic and amino acid sequences of eight Japanese encephalitis virus isolates from bats

Auteurs : Shan Liu [République populaire de Chine] ; Xing Li [République populaire de Chine] ; Zhiyong Chen [République populaire de Chine] ; Yixiong Chen [République populaire de Chine] ; Qionghua Zhang [République populaire de Chine] ; Yuxue Liao [République populaire de Chine] ; Jie Zhou [République populaire de Chine] ; Xuemei Ke [République populaire de Chine] ; Lizhen Ma [République populaire de Chine] ; Jianpeng Xiao [République populaire de Chine] ; Yi Wu [République populaire de Chine] ; Zhong Chen [République populaire de Chine] ; Junhua Zhou [République populaire de Chine] ; Xueyan Zheng [République populaire de Chine] ; Jiandong Li [République populaire de Chine] ; Qing Chen [République populaire de Chine]

Source :

RBID : ISTEX:82EFC1F23CB7099ED3FF703ADE50A93FDB223C91

Abstract

Abstract: We compared nucleotide and deduced amino acid sequences of eight Japanese encephalitis virus (JEV) isolates derived from bats in China. We also compared the bat JEV isolates with other JEV isolates available from GenBank to determine their genetic similarity. We found a high genetic homogeneity among the bat JEVs isolated in different geographical areas from various bat species at different time periods. All eight bat JEV isolates belonged to genotype III. The mean evolutionary rate of bat JEV isolates was lower than those of isolates of other origin, but this difference was not statistically significant. Based on these results, we presume that the bat JEV isolates might be evolutionarily conserved. The eight bat JEV isolates were phylogenetically similar to mosquito BN19 and human Liyujie isolates of JEV. These results indicate that bats might be involved in natural cycle of JEV.

Url:
DOI: 10.1007/s00705-013-1777-5


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI wicri:istexFullTextTei="biblStruct">
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Comparison of genomic and amino acid sequences of eight Japanese encephalitis virus isolates from bats</title>
<author>
<name sortKey="Liu, Shan" sort="Liu, Shan" uniqKey="Liu S" first="Shan" last="Liu">Shan Liu</name>
</author>
<author>
<name sortKey="Li, Xing" sort="Li, Xing" uniqKey="Li X" first="Xing" last="Li">Xing Li</name>
</author>
<author>
<name sortKey="Chen, Zhiyong" sort="Chen, Zhiyong" uniqKey="Chen Z" first="Zhiyong" last="Chen">Zhiyong Chen</name>
</author>
<author>
<name sortKey="Chen, Yixiong" sort="Chen, Yixiong" uniqKey="Chen Y" first="Yixiong" last="Chen">Yixiong Chen</name>
</author>
<author>
<name sortKey="Zhang, Qionghua" sort="Zhang, Qionghua" uniqKey="Zhang Q" first="Qionghua" last="Zhang">Qionghua Zhang</name>
</author>
<author>
<name sortKey="Liao, Yuxue" sort="Liao, Yuxue" uniqKey="Liao Y" first="Yuxue" last="Liao">Yuxue Liao</name>
</author>
<author>
<name sortKey="Zhou, Jie" sort="Zhou, Jie" uniqKey="Zhou J" first="Jie" last="Zhou">Jie Zhou</name>
</author>
<author>
<name sortKey="Ke, Xuemei" sort="Ke, Xuemei" uniqKey="Ke X" first="Xuemei" last="Ke">Xuemei Ke</name>
</author>
<author>
<name sortKey="Ma, Lizhen" sort="Ma, Lizhen" uniqKey="Ma L" first="Lizhen" last="Ma">Lizhen Ma</name>
</author>
<author>
<name sortKey="Xiao, Jianpeng" sort="Xiao, Jianpeng" uniqKey="Xiao J" first="Jianpeng" last="Xiao">Jianpeng Xiao</name>
</author>
<author>
<name sortKey="Wu, Yi" sort="Wu, Yi" uniqKey="Wu Y" first="Yi" last="Wu">Yi Wu</name>
</author>
<author>
<name sortKey="Chen, Zhong" sort="Chen, Zhong" uniqKey="Chen Z" first="Zhong" last="Chen">Zhong Chen</name>
</author>
<author>
<name sortKey="Zhou, Junhua" sort="Zhou, Junhua" uniqKey="Zhou J" first="Junhua" last="Zhou">Junhua Zhou</name>
</author>
<author>
<name sortKey="Zheng, Xueyan" sort="Zheng, Xueyan" uniqKey="Zheng X" first="Xueyan" last="Zheng">Xueyan Zheng</name>
</author>
<author>
<name sortKey="Li, Jiandong" sort="Li, Jiandong" uniqKey="Li J" first="Jiandong" last="Li">Jiandong Li</name>
</author>
<author>
<name sortKey="Chen, Qing" sort="Chen, Qing" uniqKey="Chen Q" first="Qing" last="Chen">Qing Chen</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:82EFC1F23CB7099ED3FF703ADE50A93FDB223C91</idno>
<date when="2013" year="2013">2013</date>
<idno type="doi">10.1007/s00705-013-1777-5</idno>
<idno type="url">https://api.istex.fr/ark:/67375/VQC-4J64BT15-H/fulltext.pdf</idno>
<idno type="wicri:Area/Istex/Corpus">000E95</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000E95</idno>
<idno type="wicri:Area/Istex/Curation">000E95</idno>
<idno type="wicri:Area/Istex/Checkpoint">000397</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">000397</idno>
<idno type="wicri:doubleKey">0304-8608:2013:Liu S:comparison:of:genomic</idno>
<idno type="wicri:Area/Main/Merge">001B29</idno>
<idno type="wicri:Area/Main/Curation">001B19</idno>
<idno type="wicri:Area/Main/Exploration">001B19</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title level="a" type="main" xml:lang="en">Comparison of genomic and amino acid sequences of eight Japanese encephalitis virus isolates from bats</title>
<author>
<name sortKey="Liu, Shan" sort="Liu, Shan" uniqKey="Liu S" first="Shan" last="Liu">Shan Liu</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Li, Xing" sort="Li, Xing" uniqKey="Li X" first="Xing" last="Li">Xing Li</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Chen, Zhiyong" sort="Chen, Zhiyong" uniqKey="Chen Z" first="Zhiyong" last="Chen">Zhiyong Chen</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Chen, Yixiong" sort="Chen, Yixiong" uniqKey="Chen Y" first="Yixiong" last="Chen">Yixiong Chen</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Qionghua" sort="Zhang, Qionghua" uniqKey="Zhang Q" first="Qionghua" last="Zhang">Qionghua Zhang</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Liao, Yuxue" sort="Liao, Yuxue" uniqKey="Liao Y" first="Yuxue" last="Liao">Yuxue Liao</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Zhou, Jie" sort="Zhou, Jie" uniqKey="Zhou J" first="Jie" last="Zhou">Jie Zhou</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Ke, Xuemei" sort="Ke, Xuemei" uniqKey="Ke X" first="Xuemei" last="Ke">Xuemei Ke</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Ma, Lizhen" sort="Ma, Lizhen" uniqKey="Ma L" first="Lizhen" last="Ma">Lizhen Ma</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Xiao, Jianpeng" sort="Xiao, Jianpeng" uniqKey="Xiao J" first="Jianpeng" last="Xiao">Jianpeng Xiao</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wu, Yi" sort="Wu, Yi" uniqKey="Wu Y" first="Yi" last="Wu">Yi Wu</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Science, Guangzhou University, 510006, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Chen, Zhong" sort="Chen, Zhong" uniqKey="Chen Z" first="Zhong" last="Chen">Zhong Chen</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Science, Hainan Normal University, 571158, Haikou, Hainan</wicri:regionArea>
<wicri:noRegion>Hainan</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Zhou, Junhua" sort="Zhou, Junhua" uniqKey="Zhou J" first="Junhua" last="Zhou">Junhua Zhou</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Zheng, Xueyan" sort="Zheng, Xueyan" uniqKey="Zheng X" first="Xueyan" last="Zheng">Xueyan Zheng</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Li, Jiandong" sort="Li, Jiandong" uniqKey="Li J" first="Jiandong" last="Li">Jiandong Li</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Chen, Qing" sort="Chen, Qing" uniqKey="Chen Q" first="Qing" last="Chen">Qing Chen</name>
<affiliation wicri:level="1">
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Department of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, 1838 Guangzhou North Road, 510515, Guangzhou, Guangdong</wicri:regionArea>
<wicri:noRegion>Guangdong</wicri:noRegion>
</affiliation>
<affiliation></affiliation>
</author>
</analytic>
<monogr></monogr>
<series>
<title level="j">Archives of Virology</title>
<title level="j" type="sub">Official Journal of the Virology Division of the International Union of Microbiological Societies</title>
<title level="j" type="abbrev">Arch Virol</title>
<idno type="ISSN">0304-8608</idno>
<idno type="eISSN">1432-8798</idno>
<imprint>
<publisher>Springer Vienna</publisher>
<pubPlace>Vienna</pubPlace>
<date type="published" when="2013-12-01">2013-12-01</date>
<biblScope unit="volume">158</biblScope>
<biblScope unit="issue">12</biblScope>
<biblScope unit="page" from="2543">2543</biblScope>
<biblScope unit="page" to="2552">2552</biblScope>
</imprint>
<idno type="ISSN">0304-8608</idno>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt>
<idno type="ISSN">0304-8608</idno>
</seriesStmt>
</fileDesc>
<profileDesc>
<textClass></textClass>
<langUsage>
<language ident="en">en</language>
</langUsage>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Abstract: We compared nucleotide and deduced amino acid sequences of eight Japanese encephalitis virus (JEV) isolates derived from bats in China. We also compared the bat JEV isolates with other JEV isolates available from GenBank to determine their genetic similarity. We found a high genetic homogeneity among the bat JEVs isolated in different geographical areas from various bat species at different time periods. All eight bat JEV isolates belonged to genotype III. The mean evolutionary rate of bat JEV isolates was lower than those of isolates of other origin, but this difference was not statistically significant. Based on these results, we presume that the bat JEV isolates might be evolutionarily conserved. The eight bat JEV isolates were phylogenetically similar to mosquito BN19 and human Liyujie isolates of JEV. These results indicate that bats might be involved in natural cycle of JEV.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>République populaire de Chine</li>
</country>
</list>
<tree>
<country name="République populaire de Chine">
<noRegion>
<name sortKey="Liu, Shan" sort="Liu, Shan" uniqKey="Liu S" first="Shan" last="Liu">Shan Liu</name>
</noRegion>
<name sortKey="Chen, Qing" sort="Chen, Qing" uniqKey="Chen Q" first="Qing" last="Chen">Qing Chen</name>
<name sortKey="Chen, Yixiong" sort="Chen, Yixiong" uniqKey="Chen Y" first="Yixiong" last="Chen">Yixiong Chen</name>
<name sortKey="Chen, Zhiyong" sort="Chen, Zhiyong" uniqKey="Chen Z" first="Zhiyong" last="Chen">Zhiyong Chen</name>
<name sortKey="Chen, Zhong" sort="Chen, Zhong" uniqKey="Chen Z" first="Zhong" last="Chen">Zhong Chen</name>
<name sortKey="Ke, Xuemei" sort="Ke, Xuemei" uniqKey="Ke X" first="Xuemei" last="Ke">Xuemei Ke</name>
<name sortKey="Li, Jiandong" sort="Li, Jiandong" uniqKey="Li J" first="Jiandong" last="Li">Jiandong Li</name>
<name sortKey="Li, Xing" sort="Li, Xing" uniqKey="Li X" first="Xing" last="Li">Xing Li</name>
<name sortKey="Liao, Yuxue" sort="Liao, Yuxue" uniqKey="Liao Y" first="Yuxue" last="Liao">Yuxue Liao</name>
<name sortKey="Ma, Lizhen" sort="Ma, Lizhen" uniqKey="Ma L" first="Lizhen" last="Ma">Lizhen Ma</name>
<name sortKey="Wu, Yi" sort="Wu, Yi" uniqKey="Wu Y" first="Yi" last="Wu">Yi Wu</name>
<name sortKey="Xiao, Jianpeng" sort="Xiao, Jianpeng" uniqKey="Xiao J" first="Jianpeng" last="Xiao">Jianpeng Xiao</name>
<name sortKey="Zhang, Qionghua" sort="Zhang, Qionghua" uniqKey="Zhang Q" first="Qionghua" last="Zhang">Qionghua Zhang</name>
<name sortKey="Zheng, Xueyan" sort="Zheng, Xueyan" uniqKey="Zheng X" first="Xueyan" last="Zheng">Xueyan Zheng</name>
<name sortKey="Zhou, Jie" sort="Zhou, Jie" uniqKey="Zhou J" first="Jie" last="Zhou">Jie Zhou</name>
<name sortKey="Zhou, Junhua" sort="Zhou, Junhua" uniqKey="Zhou J" first="Junhua" last="Zhou">Junhua Zhou</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001B19 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001B19 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    SrasV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     ISTEX:82EFC1F23CB7099ED3FF703ADE50A93FDB223C91
   |texte=   Comparison of genomic and amino acid sequences of eight Japanese encephalitis virus isolates from bats
}}

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Apr 28 14:49:16 2020. Site generation: Sat Mar 27 22:06:49 2021